Accessibility Summary



Overview

This ATAC-seq dataset contains accessibility profiles for 142 samples. The table below contains an overview of the provided sample annotation.

sampleId cellType donor stimulus replicate sampleGroup replicateGroup dataset source bamFilename .bamPath
Bbulk_S_1001 Bbulk_S_1001_a;Bbulk_S_1001_b Bbulk 1001 S a;b Bbulk_S Bbulk_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1001_b.noMT.filtered.deduped.bam
Bbulk_S_1002 Bbulk_S_1002_a;Bbulk_S_1002_b Bbulk 1002 S a;b Bbulk_S Bbulk_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1002_b.noMT.filtered.deduped.bam
Bbulk_S_1003 Bbulk_S_1003_a;Bbulk_S_1003_b Bbulk 1003 S a;b Bbulk_S Bbulk_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_S_1003_b.noMT.filtered.deduped.bam
Bbulk_U_1001 Bbulk_U_1001_a;Bbulk_U_1001_b Bbulk 1001 U a;b Bbulk_U Bbulk_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1001_b.noMT.filtered.deduped.bam
Bbulk_U_1002 Bbulk_U_1002_a;Bbulk_U_1002_b Bbulk 1002 U a;b Bbulk_U Bbulk_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1002_b.noMT.filtered.deduped.bam
Bbulk_U_1003 Bbulk_U_1003_a;Bbulk_U_1003_b Bbulk 1003 U a;b Bbulk_U Bbulk_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1003_b.noMT.filtered.deduped.bam
Bbulk_U_1004 Bbulk_U_1004_a;Bbulk_U_1004_b Bbulk 1004 U a;b Bbulk_U Bbulk_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bbulk_U_1004_b.noMT.filtered.deduped.bam
Bmem_S_1001 Bmem_S_1001_a;Bmem_S_1001_b Bmem 1001 S a;b Bmem_S Bmem_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1001_b.noMT.filtered.deduped.bam
Bmem_S_1002 Bmem_S_1002_a;Bmem_S_1002_b Bmem 1002 S a;b Bmem_S Bmem_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1002_b.noMT.filtered.deduped.bam
Bmem_S_1003 Bmem_S_1003_a;Bmem_S_1003_b Bmem 1003 S a;b Bmem_S Bmem_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1003_b.noMT.filtered.deduped.bam
Bmem_S_1010 Bmem_S_1010_a;Bmem_S_1010_b Bmem 1010 S a;b Bmem_S Bmem_S_1010 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1010_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1010_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1010_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_S_1010_b.noMT.filtered.deduped.bam
Bmem_U_1001 Bmem_U_1001_a;Bmem_U_1001_b Bmem 1001 U a;b Bmem_U Bmem_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1001_b.noMT.filtered.deduped.bam
Bmem_U_1002 Bmem_U_1002_a;Bmem_U_1002_b Bmem 1002 U a;b Bmem_U Bmem_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1002_b.noMT.filtered.deduped.bam
Bmem_U_1003 Bmem_U_1003_a;Bmem_U_1003_b Bmem 1003 U a;b Bmem_U Bmem_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1003_b.noMT.filtered.deduped.bam
Bmem_U_1004 Bmem_U_1004_a;Bmem_U_1004_b Bmem 1004 U a;b Bmem_U Bmem_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bmem_U_1004_b.noMT.filtered.deduped.bam
Bnaive_S_1001 Bnaive_S_1001_a;Bnaive_S_1001_b Bnaive 1001 S a;b Bnaive_S Bnaive_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1001_b.noMT.filtered.deduped.bam
Bnaive_S_1002 Bnaive_S_1002_a;Bnaive_S_1002_b Bnaive 1002 S a;b Bnaive_S Bnaive_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1002_b.noMT.filtered.deduped.bam
Bnaive_S_1003 Bnaive_S_1003_a;Bnaive_S_1003_b Bnaive 1003 S a;b Bnaive_S Bnaive_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_S_1003_b.noMT.filtered.deduped.bam
Bnaive_U_1001 Bnaive_U_1001_a;Bnaive_U_1001_b Bnaive 1001 U a;b Bnaive_U Bnaive_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1001_b.noMT.filtered.deduped.bam
Bnaive_U_1002 Bnaive_U_1002_a;Bnaive_U_1002_b Bnaive 1002 U a;b Bnaive_U Bnaive_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1002_b.noMT.filtered.deduped.bam
Bnaive_U_1003 Bnaive_U_1003_a;Bnaive_U_1003_b Bnaive 1003 U a;b Bnaive_U Bnaive_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1003_b.noMT.filtered.deduped.bam
Bnaive_U_1004 Bnaive_U_1004_a;Bnaive_U_1004_b Bnaive 1004 U a;b Bnaive_U Bnaive_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Bnaive_U_1004_b.noMT.filtered.deduped.bam
TCD4EM_S_1001 TCD4EM_S_1001_a;TCD4EM_S_1001_b TCD4EM 1001 S a;b TCD4EM_S TCD4EM_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1001_b.noMT.filtered.deduped.bam
TCD4EM_S_1002 TCD4EM_S_1002_a;TCD4EM_S_1002_b TCD4EM 1002 S a;b TCD4EM_S TCD4EM_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1002_b.noMT.filtered.deduped.bam
TCD4EM_S_1003 TCD4EM_S_1003_a TCD4EM 1003 S a TCD4EM_S TCD4EM_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1003_a.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1003_a.noMT.filtered.deduped.bam
TCD4EM_S_1004 TCD4EM_S_1004_a;TCD4EM_S_1004_b TCD4EM 1004 S a;b TCD4EM_S TCD4EM_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_S_1004_b.noMT.filtered.deduped.bam
TCD4EM_U_1001 TCD4EM_U_1001_a;TCD4EM_U_1001_b TCD4EM 1001 U a;b TCD4EM_U TCD4EM_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1001_b.noMT.filtered.deduped.bam
TCD4EM_U_1002 TCD4EM_U_1002_a;TCD4EM_U_1002_b TCD4EM 1002 U a;b TCD4EM_U TCD4EM_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1002_b.noMT.filtered.deduped.bam
TCD4EM_U_1003 TCD4EM_U_1003_a;TCD4EM_U_1003_b TCD4EM 1003 U a;b TCD4EM_U TCD4EM_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1003_b.noMT.filtered.deduped.bam
TCD4EM_U_1004 TCD4EM_U_1004_a;TCD4EM_U_1004_b TCD4EM 1004 U a;b TCD4EM_U TCD4EM_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD4EM_U_1004_b.noMT.filtered.deduped.bam
TCD8_S_1001 TCD8_S_1001_a;TCD8_S_1001_b TCD8 1001 S a;b TCD8_S TCD8_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1001_b.noMT.filtered.deduped.bam
TCD8_S_1002 TCD8_S_1002_a;TCD8_S_1002_b TCD8 1002 S a;b TCD8_S TCD8_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1002_b.noMT.filtered.deduped.bam
TCD8_S_1003 TCD8_S_1003_a;TCD8_S_1003_b TCD8 1003 S a;b TCD8_S TCD8_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1003_b.noMT.filtered.deduped.bam
TCD8_S_1004 TCD8_S_1004_a;TCD8_S_1004_b TCD8 1004 S a;b TCD8_S TCD8_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_S_1004_b.noMT.filtered.deduped.bam
TCD8_U_1001 TCD8_U_1001_a;TCD8_U_1001_b TCD8 1001 U a;b TCD8_U TCD8_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1001_b.noMT.filtered.deduped.bam
TCD8_U_1002 TCD8_U_1002_a;TCD8_U_1002_b TCD8 1002 U a;b TCD8_U TCD8_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1002_b.noMT.filtered.deduped.bam
TCD8_U_1003 TCD8_U_1003_a;TCD8_U_1003_b TCD8 1003 U a;b TCD8_U TCD8_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1003_b.noMT.filtered.deduped.bam
TCD8_U_1004 TCD8_U_1004_a;TCD8_U_1004_b TCD8 1004 U a;b TCD8_U TCD8_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8_U_1004_b.noMT.filtered.deduped.bam
TCD8CM_S_1001 TCD8CM_S_1001_a;TCD8CM_S_1001_b TCD8CM 1001 S a;b TCD8CM_S TCD8CM_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1001_b.noMT.filtered.deduped.bam
TCD8CM_S_1002 TCD8CM_S_1002_a;TCD8CM_S_1002_b TCD8CM 1002 S a;b TCD8CM_S TCD8CM_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1002_b.noMT.filtered.deduped.bam
TCD8CM_S_1003 TCD8CM_S_1003_a;TCD8CM_S_1003_b TCD8CM 1003 S a;b TCD8CM_S TCD8CM_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1003_b.noMT.filtered.deduped.bam
TCD8CM_S_1004 TCD8CM_S_1004_b TCD8CM 1004 S b TCD8CM_S TCD8CM_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_S_1004_b.noMT.filtered.deduped.bam
TCD8CM_U_1001 TCD8CM_U_1001_a;TCD8CM_U_1001_b TCD8CM 1001 U a;b TCD8CM_U TCD8CM_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1001_b.noMT.filtered.deduped.bam
TCD8CM_U_1002 TCD8CM_U_1002_a;TCD8CM_U_1002_b TCD8CM 1002 U a;b TCD8CM_U TCD8CM_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1002_b.noMT.filtered.deduped.bam
TCD8CM_U_1003 TCD8CM_U_1003_a TCD8CM 1003 U a TCD8CM_U TCD8CM_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1003_a.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1003_a.noMT.filtered.deduped.bam
TCD8CM_U_1004 TCD8CM_U_1004_a;TCD8CM_U_1004_b TCD8CM 1004 U a;b TCD8CM_U TCD8CM_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8CM_U_1004_b.noMT.filtered.deduped.bam
TCD8EM_S_1001 TCD8EM_S_1001_a;TCD8EM_S_1001_b TCD8EM 1001 S a;b TCD8EM_S TCD8EM_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1001_b.noMT.filtered.deduped.bam
TCD8EM_S_1002 TCD8EM_S_1002_a;TCD8EM_S_1002_b TCD8EM 1002 S a;b TCD8EM_S TCD8EM_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1002_b.noMT.filtered.deduped.bam
TCD8EM_S_1003 TCD8EM_S_1003_a;TCD8EM_S_1003_b TCD8EM 1003 S a;b TCD8EM_S TCD8EM_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1003_b.noMT.filtered.deduped.bam
TCD8EM_S_1004 TCD8EM_S_1004_a;TCD8EM_S_1004_b TCD8EM 1004 S a;b TCD8EM_S TCD8EM_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_S_1004_b.noMT.filtered.deduped.bam
TCD8EM_U_1001 TCD8EM_U_1001_a;TCD8EM_U_1001_b TCD8EM 1001 U a;b TCD8EM_U TCD8EM_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1001_b.noMT.filtered.deduped.bam
TCD8EM_U_1002 TCD8EM_U_1002_a;TCD8EM_U_1002_b TCD8EM 1002 U a;b TCD8EM_U TCD8EM_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1002_b.noMT.filtered.deduped.bam
TCD8EM_U_1003 TCD8EM_U_1003_a;TCD8EM_U_1003_b TCD8EM 1003 U a;b TCD8EM_U TCD8EM_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1003_b.noMT.filtered.deduped.bam
TCD8EM_U_1004 TCD8EM_U_1004_a;TCD8EM_U_1004_b TCD8EM 1004 U a;b TCD8EM_U TCD8EM_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8EM_U_1004_b.noMT.filtered.deduped.bam
TCD8naive_S_1001 TCD8naive_S_1001_a;TCD8naive_S_1001_b TCD8naive 1001 S a;b TCD8naive_S TCD8naive_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1001_b.noMT.filtered.deduped.bam
TCD8naive_S_1002 TCD8naive_S_1002_a;TCD8naive_S_1002_b TCD8naive 1002 S a;b TCD8naive_S TCD8naive_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1002_b.noMT.filtered.deduped.bam
TCD8naive_S_1003 TCD8naive_S_1003_a;TCD8naive_S_1003_b TCD8naive 1003 S a;b TCD8naive_S TCD8naive_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1003_b.noMT.filtered.deduped.bam
TCD8naive_S_1004 TCD8naive_S_1004_a;TCD8naive_S_1004_b TCD8naive 1004 S a;b TCD8naive_S TCD8naive_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_S_1004_b.noMT.filtered.deduped.bam
TCD8naive_U_1001 TCD8naive_U_1001_a;TCD8naive_U_1001_b TCD8naive 1001 U a;b TCD8naive_U TCD8naive_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1001_b.noMT.filtered.deduped.bam
TCD8naive_U_1002 TCD8naive_U_1002_a;TCD8naive_U_1002_b TCD8naive 1002 U a;b TCD8naive_U TCD8naive_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1002_b.noMT.filtered.deduped.bam
TCD8naive_U_1003 TCD8naive_U_1003_a;TCD8naive_U_1003_b TCD8naive 1003 U a;b TCD8naive_U TCD8naive_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1003_b.noMT.filtered.deduped.bam
TCD8naive_U_1004 TCD8naive_U_1004_a;TCD8naive_U_1004_b TCD8naive 1004 U a;b TCD8naive_U TCD8naive_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TCD8naive_U_1004_b.noMT.filtered.deduped.bam
TeffMem_S_1001 TeffMem_S_1001_a;TeffMem_S_1001_b TeffMem 1001 S a;b TeffMem_S TeffMem_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1001_b.noMT.filtered.deduped.bam
TeffMem_S_1002 TeffMem_S_1002_a;TeffMem_S_1002_b TeffMem 1002 S a;b TeffMem_S TeffMem_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1002_b.noMT.filtered.deduped.bam
TeffMem_S_1003 TeffMem_S_1003_a;TeffMem_S_1003_b TeffMem 1003 S a;b TeffMem_S TeffMem_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1003_b.noMT.filtered.deduped.bam
TeffMem_S_1004 TeffMem_S_1004_a;TeffMem_S_1004_b TeffMem 1004 S a;b TeffMem_S TeffMem_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_S_1004_b.noMT.filtered.deduped.bam
TeffMem_U_1001 TeffMem_U_1001_a;TeffMem_U_1001_b TeffMem 1001 U a;b TeffMem_U TeffMem_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1001_b.noMT.filtered.deduped.bam
TeffMem_U_1002 TeffMem_U_1002_a;TeffMem_U_1002_b TeffMem 1002 U a;b TeffMem_U TeffMem_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1002_b.noMT.filtered.deduped.bam
TeffMem_U_1003 TeffMem_U_1003_a;TeffMem_U_1003_b TeffMem 1003 U a;b TeffMem_U TeffMem_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1003_b.noMT.filtered.deduped.bam
TeffMem_U_1004 TeffMem_U_1004_a;TeffMem_U_1004_b TeffMem 1004 U a;b TeffMem_U TeffMem_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffMem_U_1004_b.noMT.filtered.deduped.bam
TeffNaive_S_1001 TeffNaive_S_1001_a;TeffNaive_S_1001_b TeffNaive 1001 S a;b TeffNaive_S TeffNaive_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1001_b.noMT.filtered.deduped.bam
TeffNaive_S_1002 TeffNaive_S_1002_a;TeffNaive_S_1002_b TeffNaive 1002 S a;b TeffNaive_S TeffNaive_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1002_b.noMT.filtered.deduped.bam
TeffNaive_S_1003 TeffNaive_S_1003_a;TeffNaive_S_1003_b TeffNaive 1003 S a;b TeffNaive_S TeffNaive_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1003_b.noMT.filtered.deduped.bam
TeffNaive_S_1004 TeffNaive_S_1004_a;TeffNaive_S_1004_b TeffNaive 1004 S a;b TeffNaive_S TeffNaive_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1004_b.noMT.filtered.deduped.bam
TeffNaive_S_1011 TeffNaive_S_1011_a;TeffNaive_S_1011_b TeffNaive 1011 S a;b TeffNaive_S TeffNaive_S_1011 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1011_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1011_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1011_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_S_1011_b.noMT.filtered.deduped.bam
TeffNaive_U_1001 TeffNaive_U_1001_a;TeffNaive_U_1001_b TeffNaive 1001 U a;b TeffNaive_U TeffNaive_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1001_b.noMT.filtered.deduped.bam
TeffNaive_U_1002 TeffNaive_U_1002_a;TeffNaive_U_1002_b TeffNaive 1002 U a;b TeffNaive_U TeffNaive_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1002_b.noMT.filtered.deduped.bam
TeffNaive_U_1003 TeffNaive_U_1003_a;TeffNaive_U_1003_b TeffNaive 1003 U a;b TeffNaive_U TeffNaive_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1003_b.noMT.filtered.deduped.bam
TeffNaive_U_1004 TeffNaive_U_1004_a;TeffNaive_U_1004_b TeffNaive 1004 U a;b TeffNaive_U TeffNaive_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TeffNaive_U_1004_b.noMT.filtered.deduped.bam
Tfh_S_1001 Tfh_S_1001_a;Tfh_S_1001_b Tfh 1001 S a;b Tfh_S Tfh_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1001_b.noMT.filtered.deduped.bam
Tfh_S_1002 Tfh_S_1002_a;Tfh_S_1002_b Tfh 1002 S a;b Tfh_S Tfh_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1002_b.noMT.filtered.deduped.bam
Tfh_S_1003 Tfh_S_1003_a;Tfh_S_1003_b Tfh 1003 S a;b Tfh_S Tfh_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1003_b.noMT.filtered.deduped.bam
Tfh_S_1004 Tfh_S_1004_a;Tfh_S_1004_b Tfh 1004 S a;b Tfh_S Tfh_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_S_1004_b.noMT.filtered.deduped.bam
Tfh_U_1001 Tfh_U_1001_a;Tfh_U_1001_b Tfh 1001 U a;b Tfh_U Tfh_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1001_b.noMT.filtered.deduped.bam
Tfh_U_1002 Tfh_U_1002_a;Tfh_U_1002_b Tfh 1002 U a;b Tfh_U Tfh_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1002_b.noMT.filtered.deduped.bam
Tfh_U_1003 Tfh_U_1003_b Tfh 1003 U b Tfh_U Tfh_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1003_b.noMT.filtered.deduped.bam
Tfh_U_1004 Tfh_U_1004_a;Tfh_U_1004_b Tfh 1004 U a;b Tfh_U Tfh_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1004_b.noMT.filtered.deduped.bam
Tfh_U_1010 Tfh_U_1010_a;Tfh_U_1010_b Tfh 1010 U a;b Tfh_U Tfh_U_1010 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1010_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1010_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1010_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tfh_U_1010_b.noMT.filtered.deduped.bam
Tgd_S_1001 Tgd_S_1001_a;Tgd_S_1001_b Tgd 1001 S a;b Tgd_S Tgd_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1001_b.noMT.filtered.deduped.bam
Tgd_S_1002 Tgd_S_1002_a;Tgd_S_1002_b Tgd 1002 S a;b Tgd_S Tgd_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1002_b.noMT.filtered.deduped.bam
Tgd_S_1003 Tgd_S_1003_a;Tgd_S_1003_b Tgd 1003 S a;b Tgd_S Tgd_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1003_b.noMT.filtered.deduped.bam
Tgd_S_1004 Tgd_S_1004_a;Tgd_S_1004_b Tgd 1004 S a;b Tgd_S Tgd_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_S_1004_b.noMT.filtered.deduped.bam
Tgd_U_1001 Tgd_U_1001_a;Tgd_U_1001_b Tgd 1001 U a;b Tgd_U Tgd_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1001_b.noMT.filtered.deduped.bam
Tgd_U_1002 Tgd_U_1002_a;Tgd_U_1002_b Tgd 1002 U a;b Tgd_U Tgd_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1002_b.noMT.filtered.deduped.bam
Tgd_U_1003 Tgd_U_1003_a;Tgd_U_1003_b Tgd 1003 U a;b Tgd_U Tgd_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1003_b.noMT.filtered.deduped.bam
Tgd_U_1004 Tgd_U_1004_a;Tgd_U_1004_b Tgd 1004 U a;b Tgd_U Tgd_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Tgd_U_1004_b.noMT.filtered.deduped.bam
Th17prec_S_1001 Th17prec_S_1001_a;Th17prec_S_1001_b Th17prec 1001 S a;b Th17prec_S Th17prec_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1001_b.noMT.filtered.deduped.bam
Th17prec_S_1002 Th17prec_S_1002_a;Th17prec_S_1002_b Th17prec 1002 S a;b Th17prec_S Th17prec_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1002_b.noMT.filtered.deduped.bam
Th17prec_S_1003 Th17prec_S_1003_a;Th17prec_S_1003_b Th17prec 1003 S a;b Th17prec_S Th17prec_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1003_b.noMT.filtered.deduped.bam
Th17prec_S_1004 Th17prec_S_1004_a;Th17prec_S_1004_b Th17prec 1004 S a;b Th17prec_S Th17prec_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_S_1004_b.noMT.filtered.deduped.bam
Th17prec_U_1001 Th17prec_U_1001_a;Th17prec_U_1001_b Th17prec 1001 U a;b Th17prec_U Th17prec_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1001_b.noMT.filtered.deduped.bam
Th17prec_U_1002 Th17prec_U_1002_a;Th17prec_U_1002_b Th17prec 1002 U a;b Th17prec_U Th17prec_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1002_b.noMT.filtered.deduped.bam
Th17prec_U_1003 Th17prec_U_1003_a;Th17prec_U_1003_b Th17prec 1003 U a;b Th17prec_U Th17prec_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1003_b.noMT.filtered.deduped.bam
Th17prec_U_1004 Th17prec_U_1004_a;Th17prec_U_1004_b Th17prec 1004 U a;b Th17prec_U Th17prec_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th17prec_U_1004_b.noMT.filtered.deduped.bam
Th1prec_S_1001 Th1prec_S_1001_a;Th1prec_S_1001_b Th1prec 1001 S a;b Th1prec_S Th1prec_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1001_b.noMT.filtered.deduped.bam
Th1prec_S_1002 Th1prec_S_1002_a;Th1prec_S_1002_b Th1prec 1002 S a;b Th1prec_S Th1prec_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1002_b.noMT.filtered.deduped.bam
Th1prec_S_1003 Th1prec_S_1003_a;Th1prec_S_1003_b Th1prec 1003 S a;b Th1prec_S Th1prec_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1003_b.noMT.filtered.deduped.bam
Th1prec_S_1004 Th1prec_S_1004_a;Th1prec_S_1004_b Th1prec 1004 S a;b Th1prec_S Th1prec_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_S_1004_b.noMT.filtered.deduped.bam
Th1prec_U_1001 Th1prec_U_1001_a;Th1prec_U_1001_b Th1prec 1001 U a;b Th1prec_U Th1prec_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1001_b.noMT.filtered.deduped.bam
Th1prec_U_1002 Th1prec_U_1002_a;Th1prec_U_1002_b Th1prec 1002 U a;b Th1prec_U Th1prec_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1002_b.noMT.filtered.deduped.bam
Th1prec_U_1003 Th1prec_U_1003_a;Th1prec_U_1003_b Th1prec 1003 U a;b Th1prec_U Th1prec_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1003_b.noMT.filtered.deduped.bam
Th1prec_U_1004 Th1prec_U_1004_a;Th1prec_U_1004_b Th1prec 1004 U a;b Th1prec_U Th1prec_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th1prec_U_1004_b.noMT.filtered.deduped.bam
Th2prec_S_1001 Th2prec_S_1001_a;Th2prec_S_1001_b Th2prec 1001 S a;b Th2prec_S Th2prec_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1001_b.noMT.filtered.deduped.bam
Th2prec_S_1002 Th2prec_S_1002_a;Th2prec_S_1002_b Th2prec 1002 S a;b Th2prec_S Th2prec_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1002_b.noMT.filtered.deduped.bam
Th2prec_S_1003 Th2prec_S_1003_b Th2prec 1003 S b Th2prec_S Th2prec_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1003_b.noMT.filtered.deduped.bam
Th2prec_S_1004 Th2prec_S_1004_a;Th2prec_S_1004_b Th2prec 1004 S a;b Th2prec_S Th2prec_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_S_1004_b.noMT.filtered.deduped.bam
Th2prec_U_1001 Th2prec_U_1001_a;Th2prec_U_1001_b Th2prec 1001 U a;b Th2prec_U Th2prec_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1001_b.noMT.filtered.deduped.bam
Th2prec_U_1002 Th2prec_U_1002_a;Th2prec_U_1002_b Th2prec 1002 U a;b Th2prec_U Th2prec_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1002_b.noMT.filtered.deduped.bam
Th2prec_U_1003 Th2prec_U_1003_a;Th2prec_U_1003_b Th2prec 1003 U a;b Th2prec_U Th2prec_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1003_b.noMT.filtered.deduped.bam
Th2prec_U_1004 Th2prec_U_1004_a;Th2prec_U_1004_b Th2prec 1004 U a;b Th2prec_U Th2prec_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Th2prec_U_1004_b.noMT.filtered.deduped.bam
Treg_S_1001 Treg_S_1001_a;Treg_S_1001_b Treg 1001 S a;b Treg_S Treg_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1001_b.noMT.filtered.deduped.bam
Treg_S_1002 Treg_S_1002_a;Treg_S_1002_b Treg 1002 S a;b Treg_S Treg_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1002_b.noMT.filtered.deduped.bam
Treg_S_1003 Treg_S_1003_a;Treg_S_1003_b Treg 1003 S a;b Treg_S Treg_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1003_b.noMT.filtered.deduped.bam
Treg_S_1004 Treg_S_1004_a;Treg_S_1004_b Treg 1004 S a;b Treg_S Treg_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_S_1004_b.noMT.filtered.deduped.bam
Treg_U_1001 Treg_U_1001_a;Treg_U_1001_b Treg 1001 U a;b Treg_U Treg_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1001_b.noMT.filtered.deduped.bam
Treg_U_1002 Treg_U_1002_a;Treg_U_1002_b Treg 1002 U a;b Treg_U Treg_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1002_b.noMT.filtered.deduped.bam
Treg_U_1003 Treg_U_1003_a;Treg_U_1003_b Treg 1003 U a;b Treg_U Treg_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1003_b.noMT.filtered.deduped.bam
Treg_U_1004 Treg_U_1004_a;Treg_U_1004_b Treg 1004 U a;b Treg_U Treg_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/Treg_U_1004_b.noMT.filtered.deduped.bam
TregMem_S_1001 TregMem_S_1001_a;TregMem_S_1001_b TregMem 1001 S a;b TregMem_S TregMem_S_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1001_b.noMT.filtered.deduped.bam
TregMem_S_1002 TregMem_S_1002_a;TregMem_S_1002_b TregMem 1002 S a;b TregMem_S TregMem_S_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1002_b.noMT.filtered.deduped.bam
TregMem_S_1003 TregMem_S_1003_a;TregMem_S_1003_b TregMem 1003 S a;b TregMem_S TregMem_S_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1003_b.noMT.filtered.deduped.bam
TregMem_S_1004 TregMem_S_1004_a;TregMem_S_1004_b TregMem 1004 S a;b TregMem_S TregMem_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_S_1004_b.noMT.filtered.deduped.bam
TregMem_U_1001 TregMem_U_1001_a;TregMem_U_1001_b TregMem 1001 U a;b TregMem_U TregMem_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1001_b.noMT.filtered.deduped.bam
TregMem_U_1002 TregMem_U_1002_a;TregMem_U_1002_b TregMem 1002 U a;b TregMem_U TregMem_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1002_b.noMT.filtered.deduped.bam
TregMem_U_1003 TregMem_U_1003_a;TregMem_U_1003_b TregMem 1003 U a;b TregMem_U TregMem_U_1003 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1003_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1003_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1003_b.noMT.filtered.deduped.bam
TregMem_U_1004 TregMem_U_1004_a;TregMem_U_1004_b TregMem 1004 U a;b TregMem_U TregMem_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregMem_U_1004_b.noMT.filtered.deduped.bam
TregNaive_S_1004 TregNaive_S_1004_a;TregNaive_S_1004_b TregNaive 1004 S a;b TregNaive_S TregNaive_S_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1004_b.noMT.filtered.deduped.bam
TregNaive_S_1010 TregNaive_S_1010_a;TregNaive_S_1010_b TregNaive 1010 S a;b TregNaive_S TregNaive_S_1010 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1010_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1010_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1010_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_S_1010_b.noMT.filtered.deduped.bam
TregNaive_U_1001 TregNaive_U_1001_a;TregNaive_U_1001_b TregNaive 1001 U a;b TregNaive_U TregNaive_U_1001 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1001_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1001_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1001_b.noMT.filtered.deduped.bam
TregNaive_U_1002 TregNaive_U_1002_a;TregNaive_U_1002_b TregNaive 1002 U a;b TregNaive_U TregNaive_U_1002 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1002_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1002_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1002_b.noMT.filtered.deduped.bam
TregNaive_U_1004 TregNaive_U_1004_a;TregNaive_U_1004_b TregNaive 1004 U a;b TregNaive_U TregNaive_U_1004 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1004_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1004_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1004_b.noMT.filtered.deduped.bam
TregNaive_U_1008 TregNaive_U_1008_a;TregNaive_U_1008_b TregNaive 1008 U a;b TregNaive_U TregNaive_U_1008 ImmuneAtlas NA /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1008_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1008_b.noMT.filtered.deduped.bam /oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1008_a.noMT.filtered.deduped.bam;/oak/stanford/groups/wjg/muellerf/projects/immuneAtlas/immuneAtlas/snakeATAC/snakeATAC/output/bams/deduped/TregNaive_U_1008_b.noMT.filtered.deduped.bam

Sample annotation table as TSV file

Signal has been summarized for the following region sets:

#regions transformations
t200 14330820
t10k 292150
promoters_gc_protein_coding 19696
ERB_BP_distal 81538
ERB_BP_dnase 71959
ERB_BP_proximal 102570
ERB_BP_tfbs 14707
ERB_BP_tss 20621
.peaks.cons 573891

Fragment data IS available.

Sample QC

This section contains per-sample quality control plots and data. The table below contains fragment counts for each sample.

#fragments
Bbulk_S_1001 41180375
Bbulk_S_1002 34116289
Bbulk_S_1003 24171785
Bbulk_U_1001 34503890
Bbulk_U_1002 33400442
Bbulk_U_1003 15844772
Bbulk_U_1004 27128840
Bmem_S_1001 33417840
Bmem_S_1002 41386492
Bmem_S_1003 20839995
Bmem_S_1010 49957477
Bmem_U_1001 33182814
Bmem_U_1002 31163207
Bmem_U_1003 18366382
Bmem_U_1004 27402838
Bnaive_S_1001 36978068
Bnaive_S_1002 32846223
Bnaive_S_1003 17506059
Bnaive_U_1001 29996692
Bnaive_U_1002 25811098
Bnaive_U_1003 22309446
Bnaive_U_1004 41865559
TCD4EM_S_1001 36700587
TCD4EM_S_1002 26058380
TCD4EM_S_1003 8562435
TCD4EM_S_1004 32728671
TCD4EM_U_1001 33001193
TCD4EM_U_1002 28124308
TCD4EM_U_1003 21666743
TCD4EM_U_1004 26367791
TCD8_S_1001 36855487
TCD8_S_1002 32254555
TCD8_S_1003 17530162
TCD8_S_1004 38996677
TCD8_U_1001 39235364
TCD8_U_1002 33481120
TCD8_U_1003 16205170
TCD8_U_1004 33624883
TCD8CM_S_1001 29589881
TCD8CM_S_1002 26713769
TCD8CM_S_1003 18425363
TCD8CM_S_1004 18444775
TCD8CM_U_1001 28368355
TCD8CM_U_1002 35929986
TCD8CM_U_1003 9772086
TCD8CM_U_1004 27246080
TCD8EM_S_1001 34621723
TCD8EM_S_1002 24403600
TCD8EM_S_1003 17038772
TCD8EM_S_1004 27047909
TCD8EM_U_1001 41258379
TCD8EM_U_1002 26305376
TCD8EM_U_1003 19553452
TCD8EM_U_1004 28454889
TCD8naive_S_1001 30186595
TCD8naive_S_1002 32415247
TCD8naive_S_1003 18230253
TCD8naive_S_1004 33407190
TCD8naive_U_1001 24390189
TCD8naive_U_1002 33797252
TCD8naive_U_1003 17012449
TCD8naive_U_1004 51115216
TeffMem_S_1001 25108199
TeffMem_S_1002 23566551
TeffMem_S_1003 13328400
TeffMem_S_1004 28691010
TeffMem_U_1001 23291153
TeffMem_U_1002 29160942
TeffMem_U_1003 18101605
TeffMem_U_1004 22715300
TeffNaive_S_1001 30852343
TeffNaive_S_1002 21649825
TeffNaive_S_1003 13207633
TeffNaive_S_1004 36165588
TeffNaive_S_1011 30434065
TeffNaive_U_1001 16621691
TeffNaive_U_1002 35630769
TeffNaive_U_1003 17653266
TeffNaive_U_1004 35865790
Tfh_S_1001 32526099
Tfh_S_1002 24905107
Tfh_S_1003 18407282
Tfh_S_1004 31962515
Tfh_U_1001 27231258
Tfh_U_1002 27856227
Tfh_U_1003 12964112
Tfh_U_1004 34100701
Tfh_U_1010 40326440
Tgd_S_1001 30176815
Tgd_S_1002 29164778
Tgd_S_1003 18045544
Tgd_S_1004 30021109
Tgd_U_1001 25943191
Tgd_U_1002 33487271
Tgd_U_1003 20686647
Tgd_U_1004 27807651
Th17prec_S_1001 34500078
Th17prec_S_1002 27586691
Th17prec_S_1003 17095809
Th17prec_S_1004 33553077
Th17prec_U_1001 35244870
Th17prec_U_1002 23607530
Th17prec_U_1003 17618199
Th17prec_U_1004 21745548
Th1prec_S_1001 32522763
Th1prec_S_1002 28170298
Th1prec_S_1003 16905157
Th1prec_S_1004 33055974
Th1prec_U_1001 30006180
Th1prec_U_1002 19386999
Th1prec_U_1003 9361281
Th1prec_U_1004 38986820
Th2prec_S_1001 28605551
Th2prec_S_1002 26958121
Th2prec_S_1003 8600499
Th2prec_S_1004 33803235
Th2prec_U_1001 34341469
Th2prec_U_1002 28907752
Th2prec_U_1003 19482978
Th2prec_U_1004 27049350
Treg_S_1001 17801828
Treg_S_1002 25551294
Treg_S_1003 16723132
Treg_S_1004 31694977
Treg_U_1001 14822459
Treg_U_1002 28279120
Treg_U_1003 21893032
Treg_U_1004 19150423
TregMem_S_1001 31572524
TregMem_S_1002 29837644
TregMem_S_1003 15841222
TregMem_S_1004 37337881
TregMem_U_1001 15384196
TregMem_U_1002 30122280
TregMem_U_1003 24252933
TregMem_U_1004 29415374
TregNaive_S_1004 34787824
TregNaive_S_1010 49148158
TregNaive_U_1001 17276734
TregNaive_U_1002 33055163
TregNaive_U_1004 24540487
TregNaive_U_1008 49612743
Figure 1

Open PDF Figure 1

Number of fragments per sample

Fragment size distribution

The following plot illustrates the fragment size distribution for each sample. Periodicity indicating nucleosome-bound DNA is generally an indicator of good data quality.

Sample

Figure 2

Open PDF Figure 2

Fragment size distribution

TSS profile

The following plot illustrates genome-wide enrichment of ATAC signal around transcription start sites (TSS). It is indicative of the signal-to-noise ratio in the dataset. High enrichment of signal in at TSSs compared to background indicates good sample quality. Ideally, there is a dip in the TSS profile corresponding the +1 nucleosome.

Sample

Figure 3

Open PDF Figure 3

TSS profile. Genome-wide aggregate of TSS +/- 2kb. Signal was normalized to the mean signal in the 100-bp-wide windows in the tails of the plot. A smoothing window of width 25bp has been applied to draw the profile curve.

Figure 4

Open PDF Figure 4

Scatterplot of QC metrics